The agency, monitored in Nicosia, said dozens more were killed or wounded in two more missile attacks, one on Qom and the other on Isfahan, several hours later.
But Iraq then loosed six long-range missiles against Tehran and the cities of Karaj, the holy city of Qom, Isfahan and Tabriz, the agency reported.
A list of Ayatollah Ruhollah Khomeini's assets show he owned a house and a plot of land in the religious center of Qom, but no furniture.
The official Iraqi news agency said the missiles hit Tehran, the central city of Isfahan and Qom, seat of Iran's Shiite Moslem religious hierarchy.
The Iraqi News Agency reported its gunners fired two missiles into Tehran on Tuesday, two into the holy city of Qom and one into Isfahan in central Iran.
It said three missiles were fired into Tehran and one at the holy city of Qom.
Khomeini, the son of a religious leader from a village southwest of Tehran, taught for years at Qom, the center of Shiite teaching in Iran.
The official Iraqi News Agency, monitored in Nicosia, said Iraqi troops fired two long-range missiles into Qom at 11:45 p.m. and said they would be the last if Iran did not retaliate.
Rafsanjani and Ayatollah Hussein Ali Montazeri met at Montazeri's home in the holy city of Qom, 100 miles south of Tehran.
Though the ayatollah has long since moved to north Tehran, the intellectual, spiritual and therefore political heart of Iran has remained in Qom.
But Velayati told theologians in Qom on Tuesday the talks were being held within the framework of that treaty, Iran's Islamic Republic News Agency said.
It was in Qom, after a two-hour ride by car from Tehran, that I met Hussein Ali Montazeri, Ayatollah Khomeini's designated successor.
The Iraqi agency also said another missile was fired into the holy city of Qom, the cradle of Iran's Islamic revolution and south of Tehran, around daybreak, when Moslems pray.